Variant report

Variant	rs17083184
Chromosome Location	chr4:54465188-54465189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:54463000..54465216-chr4:54466002..54469031,3	K562	blood:
2	chr4:54456205..54457854-chr4:54464547..54466581,2	MCF-7	breast:
3	chr4:54455903..54460072-chr4:54463217..54466380,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072201	Chromatin interaction
ENSG00000248494	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17716956	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs60680696	1.00[ASN][1000 genomes]
rs73151321	1.00[ASN][1000 genomes]
rs959094	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437918	chr4:54451175-54483569	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54459600-54465200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:54459600-54465200	Weak transcription	Right Ventricle	heart
3	chr4:54459600-54465400	Weak transcription	Left Ventricle	heart
4	chr4:54459600-54467400	Weak transcription	Esophagus	oesophagus
5	chr4:54459600-54467400	Weak transcription	Pancreas	Pancrea
6	chr4:54459600-54467400	Weak transcription	Right Atrium	heart
7	chr4:54459800-54467400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:54460000-54465800	Weak transcription	GM12878-XiMat	blood
9	chr4:54460200-54467400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:54460200-54467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:54460200-54467600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:54461400-54467000	Weak transcription	Placenta	Placenta
13	chr4:54462000-54467400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:54462400-54467400	Weak transcription	HMEC	breast
15	chr4:54463800-54471800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:54464400-54465600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:54464600-54465400	Enhancers	Stomach Mucosa	stomach
18	chr4:54464600-54466000	Enhancers	Fetal Intestine Small	intestine
19	chr4:54464600-54466000	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:54464600-54466200	Enhancers	Fetal Intestine Large	intestine
21	chr4:54464800-54465200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:54464800-54465600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:54464800-54465800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:54465000-54465400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:54465000-54465400	Enhancers	Osteobl	bone
26	chr4:54465000-54465600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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