Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:54456205..54457854-chr4:54464547..54466581,2	MCF-7	breast:
2	chr10:7861805..7864417-chr4:54466465..54469298,2	MCF-7	breast:
3	chr4:54463000..54465216-chr4:54466002..54469031,3	K562	blood:
4	chr4:54450499..54453685-chr4:54466144..54467975,3	MCF-7	breast:
5	chr4:54460125..54463943-chr4:54465847..54469777,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072201	Chromatin interaction

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2117599	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv437918	chr4:54451175-54483569	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54459600-54467400	Weak transcription	Esophagus	oesophagus
2	chr4:54459600-54467400	Weak transcription	Pancreas	Pancrea
3	chr4:54459600-54467400	Weak transcription	Right Atrium	heart
4	chr4:54459800-54467400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:54460200-54467400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:54460200-54467400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:54460200-54467600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:54461400-54467000	Weak transcription	Placenta	Placenta
9	chr4:54462000-54467400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:54462400-54467400	Weak transcription	HMEC	breast
11	chr4:54463800-54471800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:54465200-54466800	Enhancers	Fetal Muscle Leg	muscle
13	chr4:54465600-54467400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:54465600-54467600	Weak transcription	Right Ventricle	heart
15	chr4:54465800-54467600	Enhancers	GM12878-XiMat	blood
16	chr4:54466000-54467400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr4:54466000-54467400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:54466000-54467800	Weak transcription	Left Ventricle	heart
19	chr4:54466000-54469000	Weak transcription	Fetal Intestine Small	intestine
20	chr4:54466200-54467800	Weak transcription	Fetal Intestine Large	intestine

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