Variant report

Variant	rs17083737
Chromosome Location	chr4:54804386-54804387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17083526	1.00[EUR][1000 genomes]
rs56297679	1.00[EUR][1000 genomes]
rs6828077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879018	chr4:54714753-55030375	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1003167	chr4:54732051-55081905	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv537096	chr4:54732051-55081905	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1014456	chr4:54759975-54807987	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1014406	chr4:54773519-54813321	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54792000-54809200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:54795200-54809400	Weak transcription	HSMM	muscle
3	chr4:54799400-54809000	Weak transcription	HUVEC	blood vessel
4	chr4:54801400-54804800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:54802400-54809000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:54803000-54804400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr4:54803000-54804400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:54803400-54805000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:54803600-54804800	Enhancers	NH-A	brain
10	chr4:54803800-54804400	Enhancers	NHLF	lung
11	chr4:54803800-54804600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:54803800-54804600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:54804000-54804400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:54804000-54804400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:54804000-54804400	Enhancers	NHDF-Ad	bronchial
16	chr4:54804000-54804600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:54804000-54804800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:54804200-54804400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:54804200-54804400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr4:54804200-54804400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:54804200-54804400	Enhancers	HMEC	breast
22	chr4:54804200-54804600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:54804200-54804600	Flanking Active TSS	Osteobl	bone

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