Variant report

Variant	rs17084093
Chromosome Location	chr6:153758922-153758923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17084121	1.00[EUR][1000 genomes]
rs17084143	1.00[EUR][1000 genomes]
rs3843916	1.00[EUR][1000 genomes]
rs3860821	1.00[EUR][1000 genomes]
rs57617449	1.00[EUR][1000 genomes]
rs59716024	1.00[EUR][1000 genomes]
rs60534537	1.00[EUR][1000 genomes]
rs60874941	1.00[EUR][1000 genomes]
rs61357797	1.00[EUR][1000 genomes]
rs6910462	1.00[EUR][1000 genomes]
rs73569661	1.00[EUR][1000 genomes]
rs73574808	1.00[EUR][1000 genomes]
rs73787553	1.00[EUR][1000 genomes]
rs73787554	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916080	chr6:153650242-153881059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv915884	chr6:153717053-153979225	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3529752	chr6:153733306-154425819	Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3529753	chr6:153733306-154425819	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv886777	chr6:153748334-153798384	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886778	chr6:153748334-153801170	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886779	chr6:153748334-153804853	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886780	chr6:153748334-153822736	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv886781	chr6:153748334-153844303	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv604915	chr6:153753285-153830536	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886782	chr6:153757736-153855165	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:153756200-153759400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:153756600-153759200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:153756800-153759200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:153756800-153759200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:153756800-153759200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:153757200-153761400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:153757800-153759200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:153758000-153761400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:153758000-153764000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:153758000-153764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:153758800-153759200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:153758800-153760000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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