Variant report

Variant	rs17084241
Chromosome Location	chr4:55251279-55251280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11934334	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939940	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1507968	1.00[CEU][hapmap]
rs1562059	0.85[ASN][1000 genomes]
rs17084357	1.00[CEU][hapmap]
rs17084361	1.00[CEU][hapmap]
rs62299457	0.93[ASN][1000 genomes]
rs73155443	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73820740	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73820741	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7697680	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55250200-55251400	Enhancers	Fetal Stomach	stomach
2	chr4:55250800-55251400	Enhancers	Brain Cingulate Gyrus	brain
3	chr4:55250800-55251600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:55250800-55251600	Enhancers	Brain Hippocampus Middle	brain
5	chr4:55251000-55251400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:55251000-55251600	Enhancers	Brain Substantia Nigra	brain
7	chr4:55251000-55251800	Enhancers	Brain Anterior Caudate	brain
8	chr4:55251000-55251800	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr4:55251000-55252200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:55251000-55252600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:55251000-55253000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:55251200-55251600	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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