Variant report

Variant	rs17084713
Chromosome Location	chr4:55597458-55597459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10488847	1.00[AMR][1000 genomes]
rs17084705	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3109926	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv3367952	chr4:55437113-55724644	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv966517	chr4:55593589-55598141	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55561000-55606600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:55576400-55602000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:55576400-55602600	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:55584400-55606200	Weak transcription	Brain Hippocampus Middle	brain
5	chr4:55585200-55608400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:55586600-55604600	Weak transcription	Lung	lung
7	chr4:55587800-55607600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:55588200-55608000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:55588600-55611600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:55589600-55608400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:55589800-55607400	Weak transcription	Left Ventricle	heart
12	chr4:55590000-55603400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:55590000-55608000	Strong transcription	Primary hematopoietic stem cells	blood
14	chr4:55590600-55602200	Weak transcription	Fetal Brain Female	brain
15	chr4:55591200-55597600	Weak transcription	Fetal Kidney	kidney
16	chr4:55591800-55599200	Weak transcription	Adipose Nuclei	Adipose
17	chr4:55592600-55609000	Weak transcription	Fetal Stomach	stomach
18	chr4:55593400-55598200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr4:55593400-55607200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:55593600-55602600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:55593600-55606800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:55593800-55598200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:55593800-55600400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr4:55594200-55602200	Weak transcription	Aorta	Aorta
25	chr4:55594400-55602600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:55594400-55607000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:55594600-55599800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:55596000-55598200	Strong transcription	NHDF-Ad	bronchial
29	chr4:55596200-55597600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:55596200-55599800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr4:55596400-55597800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:55596600-55598800	Weak transcription	Fetal Brain Male	brain
33	chr4:55597000-55597800	Strong transcription	Ovary	ovary
34	chr4:55597000-55600600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:55597200-55597600	ZNF genes & repeats	NHLF	lung
36	chr4:55597400-55597800	Enhancers	HUVEC	blood vessel
37	chr4:55597400-55598000	Strong transcription	Fetal Muscle Trunk	muscle
38	chr4:55597400-55598200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:55597400-55598400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:55597400-55599600	Enhancers	Fetal Lung	lung

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