Variant report

Variant	rs17085478
Chromosome Location	chr4:56052629-56052630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55837282..55838240-chr4:56052038..56052925,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17085482	1.00[AMR][1000 genomes]
rs73151207	1.00[AMR][1000 genomes]
rs733377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56046800-56054200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:56047800-56053800	Enhancers	HUVEC	blood vessel
3	chr4:56049200-56054200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr4:56050200-56052800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:56050200-56054000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:56050200-56054200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr4:56050200-56054600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:56050200-56054600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:56050600-56053400	Enhancers	Fetal Lung	lung
10	chr4:56051000-56053400	Enhancers	Fetal Heart	heart
11	chr4:56051000-56054400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:56051000-56054600	Weak transcription	Lung	lung
13	chr4:56051200-56054800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:56051400-56054400	Weak transcription	Left Ventricle	heart
15	chr4:56052000-56052800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr4:56052000-56053000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr4:56052000-56053000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:56052000-56053200	Weak transcription	Ovary	ovary
19	chr4:56052000-56054200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr4:56052000-56054600	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:56052200-56054400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:56052400-56054000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:56052600-56053000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:56052600-56053600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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