Variant report

Variant	rs17085658
Chromosome Location	chr5:95719923-95719924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:95718819..95721570-chr5:95740186..95742530,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10036439	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10039299	0.80[AFR][1000 genomes]
rs10213823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10213965	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476552	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10476553	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10476678	0.83[AFR][1000 genomes]
rs10476679	0.83[AFR][1000 genomes]
rs10476680	0.83[AFR][1000 genomes]
rs12332295	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12332412	0.83[AFR][1000 genomes]
rs13168460	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13169290	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17085655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085665	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17085675	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28615471	0.82[AFR][1000 genomes]
rs2882298	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35247507	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35648612	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36115340	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59139497	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6234	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6235	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865757	0.83[AFR][1000 genomes]
rs6869253	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6890994	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7700417	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711171	0.81[AFR][1000 genomes]
rs7713317	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7722200	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725103	0.81[AFR][1000 genomes]
rs9285019	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95718800-95726800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr5:95719000-95721000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr5:95719600-95720400	Enhancers	Right Atrium	heart
4	chr5:95719600-95720400	Enhancers	Stomach Smooth Muscle	stomach
5	chr5:95719600-95720600	Enhancers	HSMM	muscle
6	chr5:95719600-95720800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:95719600-95720800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:95719600-95720800	Enhancers	Fetal Heart	heart
9	chr5:95719600-95721000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:95719600-95721000	Enhancers	Hela-S3	cervix
11	chr5:95719600-95721000	Enhancers	HMEC	breast
12	chr5:95719600-95721000	Enhancers	Osteobl	bone
13	chr5:95719800-95720000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:95719800-95720000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:95719800-95720000	Flanking Active TSS	HSMMtube	muscle
16	chr5:95719800-95720200	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr5:95719800-95720400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:95719800-95720400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:95719800-95720600	Enhancers	NH-A	brain
20	chr5:95719800-95720800	Enhancers	HUVEC	blood vessel
21	chr5:95719800-95720800	Enhancers	NHDF-Ad	bronchial
22	chr5:95719800-95721400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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