Variant report

Variant	rs17086538
Chromosome Location	chr9:86261901-86261902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:86236003..86240617-chr9:86259278..86264102,9	MCF-7	breast:
2	chr9:86261774..86264324-chr9:86321167..86322905,2	MCF-7	breast:
3	chr9:86256742..86260226-chr9:86261341..86265382,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254473	Chromatin interaction
ENSG00000148057	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17086544	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17086566	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57786992	1.00[AMR][1000 genomes]
rs59649332	1.00[AMR][1000 genomes]
rs7033585	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7035771	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7866066	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893512	chr9:86022215-86323309	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1044639	chr9:86252505-86412041	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86238600-86265000	Weak transcription	Ovary	ovary
2	chr9:86238800-86264600	Weak transcription	Psoas Muscle	Psoas
3	chr9:86239000-86264800	Weak transcription	HMEC	breast
4	chr9:86239000-86265200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:86239400-86266200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:86239400-86266400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:86239600-86265000	Weak transcription	HUVEC	blood vessel
8	chr9:86239600-86266600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:86239600-86272200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:86239800-86266800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr9:86240200-86265000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:86242400-86264800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr9:86242600-86265000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr9:86243200-86269600	Weak transcription	Pancreas	Pancrea
15	chr9:86243600-86264800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr9:86243600-86266200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr9:86244200-86264600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:86244400-86262200	Weak transcription	A549	lung
19	chr9:86244400-86264600	Weak transcription	NHLF	lung
20	chr9:86244800-86278800	Weak transcription	Spleen	Spleen
21	chr9:86244800-86285800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr9:86245000-86264800	Weak transcription	Dnd41	blood
23	chr9:86245000-86265000	Weak transcription	Aorta	Aorta
24	chr9:86245000-86265000	Weak transcription	Esophagus	oesophagus
25	chr9:86245000-86268800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:86245200-86264600	Weak transcription	Osteobl	bone
27	chr9:86245200-86266400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr9:86246000-86265000	Weak transcription	Fetal Kidney	kidney
29	chr9:86246000-86266400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:86246200-86264400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:86246200-86265000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:86246400-86262400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:86246600-86262000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:86247000-86262200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr9:86248400-86266200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr9:86249000-86264000	Weak transcription	K562	blood
37	chr9:86252000-86266800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr9:86252400-86265200	Weak transcription	NH-A	brain
39	chr9:86252800-86294000	Weak transcription	Small Intestine	intestine
40	chr9:86253000-86268600	Weak transcription	HepG2	liver
41	chr9:86253200-86265000	Weak transcription	Liver	Liver
42	chr9:86254600-86262400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:86254800-86265000	Weak transcription	HSMM	muscle
44	chr9:86255000-86262000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:86255000-86262000	Weak transcription	Left Ventricle	heart
46	chr9:86255000-86264600	Weak transcription	Brain Anterior Caudate	brain
47	chr9:86255000-86264600	Weak transcription	HSMMtube	muscle
48	chr9:86255000-86264800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:86255000-86264800	Weak transcription	Duodenum Mucosa	Duodenum
50	chr9:86255000-86266000	Weak transcription	Brain Cingulate Gyrus	brain

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