Variant report

Variant	rs17087401
Chromosome Location	chr4:57901155-57901156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:57893930..57897148-chr4:57898459..57902264,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12642622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12648928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1277313	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs13145672	0.86[JPT][hapmap]
rs1608165	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1718824	0.89[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3733309	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs55755514	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868815	chr4:57114268-58084688	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:57863400-57907800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:57889000-57910200	Weak transcription	Esophagus	oesophagus
3	chr4:57890000-57903000	Strong transcription	HSMM	muscle
4	chr4:57890400-57903600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:57890400-57905600	Strong transcription	Osteobl	bone
6	chr4:57892000-57901200	Weak transcription	Small Intestine	intestine
7	chr4:57892000-57904400	Weak transcription	Fetal Heart	heart
8	chr4:57892000-57906600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:57892000-57908200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:57892200-57908000	Weak transcription	Pancreas	Pancrea
11	chr4:57893800-57906600	Weak transcription	Spleen	Spleen
12	chr4:57893800-57908000	Weak transcription	Aorta	Aorta
13	chr4:57894800-57904400	Weak transcription	Hela-S3	cervix
14	chr4:57895000-57901400	Weak transcription	Stomach Mucosa	stomach
15	chr4:57896600-57904200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:57896600-57905600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:57896800-57909200	Weak transcription	Psoas Muscle	Psoas
18	chr4:57897200-57901400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:57897200-57904000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:57897800-57901200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr4:57897800-57904200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:57897800-57904400	Weak transcription	K562	blood
23	chr4:57898000-57904400	Weak transcription	Brain Germinal Matrix	brain
24	chr4:57898000-57905400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:57898000-57909800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr4:57898200-57901400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr4:57898200-57904000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:57898200-57904000	Weak transcription	Brain Angular Gyrus	brain
29	chr4:57898200-57904400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr4:57898200-57904400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:57898200-57908000	Weak transcription	Fetal Lung	lung
32	chr4:57898200-57910000	Weak transcription	Lung	lung
33	chr4:57898400-57901600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:57898400-57904400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr4:57898400-57905600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr4:57898400-57906800	Weak transcription	Colonic Mucosa	Colon
37	chr4:57898600-57901200	Weak transcription	Primary B cells from cord blood	blood
38	chr4:57898800-57904200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:57898800-57904400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:57898800-57905400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:57898800-57908000	Weak transcription	NHDF-Ad	bronchial
42	chr4:57898800-57917800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr4:57899000-57902000	Weak transcription	Fetal Brain Male	brain
44	chr4:57899000-57904400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr4:57899000-57904400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr4:57899000-57904400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:57899200-57904400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:57899200-57914600	Weak transcription	Brain Substantia Nigra	brain
49	chr4:57899400-57901200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr4:57899400-57901200	Weak transcription	Liver	Liver

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