Variant report

Variant	rs17089446
Chromosome Location	chr4:60023816-60023817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10001575	0.90[EUR][1000 genomes]
rs10003460	0.90[EUR][1000 genomes]
rs10027542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs168575	0.91[EUR][1000 genomes]
rs28506772	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28592724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28661357	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs357829	0.91[EUR][1000 genomes]
rs72640939	0.91[EUR][1000 genomes]
rs72640999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72642203	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011113	chr4:59647956-60263029	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv829946	chr4:59913771-60083867	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:60022200-60025200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:60022200-60025600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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