Variant report

Variant	rs17090708
Chromosome Location	chr14:56392926-56392927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1107097	0.90[ASN][1000 genomes]
rs17090705	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952882	0.88[ASN][1000 genomes]
rs2342851	0.90[ASN][1000 genomes]
rs4898878	0.83[ASN][1000 genomes]
rs7144669	0.82[CHD][hapmap]
rs7146394	0.90[ASN][1000 genomes]
rs7146594	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56380800-56394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56387200-56395800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:56389200-56393800	Weak transcription	Gastric	stomach
4	chr14:56391200-56393800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:56391400-56395200	Enhancers	Stomach Mucosa	stomach
6	chr14:56391800-56393400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:56391800-56395000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:56391800-56395800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:56391800-56395800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr14:56391800-56396200	Enhancers	Fetal Intestine Large	intestine
11	chr14:56391800-56396200	Enhancers	Fetal Intestine Small	intestine
12	chr14:56392200-56393200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:56392400-56393000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:56392400-56393000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:56392400-56394000	Enhancers	HepG2	liver
16	chr14:56392400-56395200	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:56392600-56393000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
18	chr14:56392600-56393000	Enhancers	Fetal Heart	heart
19	chr14:56392600-56393200	Enhancers	Colonic Mucosa	Colon
20	chr14:56392600-56393800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:56392600-56394800	Enhancers	Pancreas	Pancrea
22	chr14:56392600-56396000	Enhancers	Duodenum Mucosa	Duodenum
23	chr14:56392600-56396200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr14:56392800-56393600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:56392800-56394200	Enhancers	H1 Cell Line	embryonic stem cell
26	chr14:56392800-56394800	Enhancers	Small Intestine	intestine
27	chr14:56392800-56395800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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