Variant report

Variant	rs17090903
Chromosome Location	chr8:19567921-19567922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10503662	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11781275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11784365	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1492643	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17090867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17091020	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17091027	0.94[EUR][1000 genomes]
rs17409243	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17481438	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1025271	chr8:19435147-19574969	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1021731	chr8:19515149-19643313	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1021225	chr8:19554860-19586580	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19555000-19573200	Weak transcription	Pancreas	Pancrea
2	chr8:19555200-19573600	Weak transcription	Fetal Stomach	stomach
3	chr8:19558600-19570800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr8:19558600-19573400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:19559200-19571200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr8:19559200-19573400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:19559200-19573600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:19563000-19569400	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:19563200-19578200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:19564200-19570800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:19564200-19571000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:19564600-19570600	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:19564600-19571000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr8:19564800-19570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:19564800-19571000	Weak transcription	Aorta	Aorta
16	chr8:19565800-19568200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:19566000-19568000	Strong transcription	A549	lung
18	chr8:19566200-19568400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr8:19566400-19570400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr8:19566800-19570000	Weak transcription	HUVEC	blood vessel
21	chr8:19567000-19569600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr8:19567200-19568000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr8:19567200-19568400	Enhancers	Fetal Brain Male	brain
24	chr8:19567200-19568600	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr8:19567200-19569200	Enhancers	Fetal Brain Female	brain
26	chr8:19567200-19572400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr8:19567400-19569400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:19567400-19570400	Weak transcription	Placenta	Placenta
29	chr8:19567400-19573400	Weak transcription	Right Ventricle	heart
30	chr8:19567600-19568000	Weak transcription	Primary T cells from cord blood	blood
31	chr8:19567600-19568400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr8:19567600-19570400	Weak transcription	Hela-S3	cervix
33	chr8:19567600-19573200	Weak transcription	Right Atrium	heart
34	chr8:19567800-19568000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:19567800-19568000	Flanking Active TSS	Ovary	ovary
36	chr8:19567800-19568400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr8:19567800-19568400	Enhancers	Brain Anterior Caudate	brain
38	chr8:19567800-19569000	Enhancers	Primary B cells from cord blood	blood

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