Variant report

Variant	rs17091494
Chromosome Location	chr14:31009598-31009599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17096939	1.00[AMR][1000 genomes]
rs17096960	1.00[AMR][1000 genomes]
rs17097001	1.00[AMR][1000 genomes]
rs17097006	1.00[AMR][1000 genomes]
rs17097097	1.00[AMR][1000 genomes]
rs17097128	1.00[AMR][1000 genomes]
rs17097173	1.00[AMR][1000 genomes]
rs57373297	1.00[AMR][1000 genomes]
rs57482448	1.00[AMR][1000 genomes]
rs58678418	1.00[AMR][1000 genomes]
rs59660692	1.00[AMR][1000 genomes]
rs73251159	1.00[AMR][1000 genomes]
rs73251163	1.00[AMR][1000 genomes]
rs73251178	1.00[AMR][1000 genomes]
rs73253023	1.00[AMR][1000 genomes]
rs73254547	1.00[AMR][1000 genomes]
rs73255984	1.00[AMR][1000 genomes]
rs73264322	1.00[AMR][1000 genomes]
rs73264350	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31002400-31020800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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