Variant report
| Variant | rs17091532 |
|---|---|
| Chromosome Location | chr8:19667559-19667560 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:19666451..19668872-chr8:19672974..19676018,3 | K562 | blood: | |
| 2 | chr8:19666911..19668537-chr8:19674368..19676581,2 | MCF-7 | breast: | |
| 3 | chr8:19665994..19668297-chr8:19676557..19678273,2 | K562 | blood: | |
| 4 | chr8:19666451..19668639-chr8:19672974..19675675,2 | K562 | blood: | |
| 5 | chr8:19664969..19667659-chr8:19669257..19670993,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000104613 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10087146 | 1.00[ASW][hapmap] |
| rs11779896 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11783801 | 0.85[EUR][1000 genomes] |
| rs11786874 | 0.85[EUR][1000 genomes] |
| rs11994107 | 0.90[EUR][1000 genomes] |
| rs11994564 | 0.89[EUR][1000 genomes] |
| rs1492644 | 1.00[ASW][hapmap] |
| rs4244455 | 1.00[ASW][hapmap] |
| rs4614014 | 0.92[EUR][1000 genomes] |
| rs55896328 | 0.89[EUR][1000 genomes] |
| rs58724686 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73204749 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73206573 | 0.92[EUR][1000 genomes] |
| rs73206576 | 0.92[EUR][1000 genomes] |
| rs73206580 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv890625 | chr8:19368697-19799641 | Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv610759 | chr8:19561997-20068842 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:19666200-19668400 | Enhancers | Placenta | Placenta |
