Variant report

Variant	rs17091815
Chromosome Location	chr8:19824604-19824605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11994844	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11997167	0.82[AFR][1000 genomes]
rs17091775	1.00[AMR][1000 genomes]
rs17091870	1.00[AMR][1000 genomes]
rs17091879	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091926	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17091949	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17116619	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs280	1.00[AMR][1000 genomes]
rs306	1.00[AMR][1000 genomes]
rs60618652	1.00[AMR][1000 genomes]
rs7003628	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv890632	chr8:19816371-19853146	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515694	chr8:19821233-19824896	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19805000-19824800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:19811800-19826000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:19817000-19824800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:19820400-19825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:19820600-19824800	Strong transcription	Adipose Nuclei	Adipose
6	chr8:19820600-19824800	Weak transcription	Ovary	ovary
7	chr8:19820600-19825000	Weak transcription	Lung	lung
8	chr8:19820600-19833400	Weak transcription	Psoas Muscle	Psoas
9	chr8:19821000-19826200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr8:19822200-19824800	Weak transcription	Right Ventricle	heart
11	chr8:19822800-19824800	Enhancers	Fetal Heart	heart
12	chr8:19823400-19825600	Enhancers	Fetal Lung	lung
13	chr8:19823400-19828200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:19824000-19825600	Weak transcription	Left Ventricle	heart
15	chr8:19824600-19826400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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