Variant report

Variant	rs17091962
Chromosome Location	chr1:72415367-72415368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493490	0.84[JPT][hapmap]
rs11209871	0.84[JPT][hapmap]
rs11209878	0.84[JPT][hapmap]
rs11209888	0.80[JPT][hapmap]
rs1155261	0.80[JPT][hapmap]
rs12024501	0.80[JPT][hapmap]
rs12029938	0.84[JPT][hapmap]
rs12034458	0.82[JPT][hapmap]
rs12035495	0.84[JPT][hapmap]
rs12043636	0.84[JPT][hapmap]
rs12047003	0.84[JPT][hapmap]
rs17091997	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs17092178	0.80[JPT][hapmap]
rs17092217	0.80[JPT][hapmap]
rs6667732	0.84[JPT][hapmap]
rs6667747	0.84[JPT][hapmap]
rs6678735	0.84[JPT][hapmap]
rs6696193	0.84[JPT][hapmap]
rs6698069	0.84[JPT][hapmap]
rs7520086	0.80[JPT][hapmap]
rs7553008	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948821	chr1:72049987-72477221	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1003446	chr1:72060680-72419918	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817447	chr1:72098815-72558020	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv916783	chr1:72196061-72707953	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1007910	chr1:72247302-72543998	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv999162	chr1:72319163-72477496	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv534995	chr1:72319163-72477496	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv428763	chr1:72353556-72499701	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:72412000-72415400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr1:72415000-72416600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:72415200-72415800	Weak transcription	Brain Anterior Caudate	brain

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