Variant report

Variant	rs17092458
Chromosome Location	chr8:20311915-20311916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17092445	1.00[EUR][1000 genomes]
rs17092450	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092483	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092520	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092693	1.00[EUR][1000 genomes]
rs17092722	1.00[EUR][1000 genomes]
rs17092731	1.00[EUR][1000 genomes]
rs17092736	1.00[EUR][1000 genomes]
rs17116636	1.00[EUR][1000 genomes]
rs58060113	1.00[EUR][1000 genomes]
rs58642906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73626729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20305600-20312000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:20309200-20312400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:20310800-20313800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:20311000-20312200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:20311200-20312200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:20311200-20312400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:20311200-20313600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:20311200-20313600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:20311200-20313800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:20311600-20312800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:20311800-20312000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr8:20311800-20312000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr8:20311800-20312600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr8:20311800-20313200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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