Variant report

Variant	rs17092705
Chromosome Location	chr8:20377795-20377796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10464996	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10503682	0.89[EUR][1000 genomes]
rs1351381	0.87[EUR][1000 genomes]
rs1383248	0.89[EUR][1000 genomes]
rs17092692	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17092696	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17092697	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17092700	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092702	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092733	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17420434	0.95[EUR][1000 genomes]
rs17420448	0.95[EUR][1000 genomes]
rs17420455	0.89[EUR][1000 genomes]
rs17420595	0.87[EUR][1000 genomes]
rs17420602	0.87[EUR][1000 genomes]
rs17492344	0.95[EUR][1000 genomes]
rs17492491	0.87[EUR][1000 genomes]
rs1979430	0.89[EUR][1000 genomes]
rs1979431	0.89[EUR][1000 genomes]
rs1979432	0.89[EUR][1000 genomes]
rs6994255	0.95[EUR][1000 genomes]
rs73614170	0.82[EUR][1000 genomes]
rs9325871	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3411546	chr8:20376572-20380970	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3435223	chr8:20377272-20380470	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20377000-20378000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:20377200-20377800	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:20377200-20379600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:20377400-20377800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:20377400-20378200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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