Variant report

Variant	rs17092979
Chromosome Location	chr8:20555519-20555520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11986412	1.00[EUR][1000 genomes]
rs17092939	1.00[EUR][1000 genomes]
rs17092949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092968	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17092972	0.97[AFR][1000 genomes]
rs17092986	0.94[AFR][1000 genomes]
rs17092995	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17093157	1.00[EUR][1000 genomes]
rs17093167	1.00[EUR][1000 genomes]
rs17093176	1.00[EUR][1000 genomes]
rs17116648	1.00[EUR][1000 genomes]
rs17493314	0.97[AFR][1000 genomes]
rs4412388	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4617171	0.88[AFR][1000 genomes]
rs57680857	0.97[AFR][1000 genomes]
rs60973888	1.00[EUR][1000 genomes]
rs6987269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6993881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7004583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667856	0.97[AFR][1000 genomes]
rs73667857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667859	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667860	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73667873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668005	1.00[EUR][1000 genomes]
rs73668006	1.00[EUR][1000 genomes]
rs73668007	1.00[EUR][1000 genomes]
rs7815723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841702	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1027535	chr8:20506377-20613664	Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	esv2761417	chr8:20523767-20669443	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20540600-20557000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:20552000-20557200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:20552200-20559800	Weak transcription	Fetal Kidney	kidney
4	chr8:20554400-20556000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:20554400-20556000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:20554600-20556000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:20555000-20555800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:20555200-20555600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:20555200-20556000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:20555400-20555600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:20555400-20555600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:20555400-20556000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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