Variant report

Variant	rs17093145
Chromosome Location	chr8:20644274-20644275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11989998	1.00[EUR][1000 genomes]
rs11990001	1.00[EUR][1000 genomes]
rs11991753	1.00[EUR][1000 genomes]
rs1441796	1.00[EUR][1000 genomes]
rs1441798	1.00[EUR][1000 genomes]
rs17092970	1.00[EUR][1000 genomes]
rs17093103	1.00[EUR][1000 genomes]
rs17093105	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17093107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1946955	1.00[EUR][1000 genomes]
rs2583675	1.00[EUR][1000 genomes]
rs2583688	1.00[EUR][1000 genomes]
rs28416913	1.00[EUR][1000 genomes]
rs28447174	1.00[EUR][1000 genomes]
rs28465358	1.00[EUR][1000 genomes]
rs28639666	1.00[EUR][1000 genomes]
rs41359246	1.00[AMR][1000 genomes]
rs57509222	1.00[EUR][1000 genomes]
rs59265254	1.00[EUR][1000 genomes]
rs7016713	1.00[EUR][1000 genomes]
rs7017521	1.00[EUR][1000 genomes]
rs73625285	1.00[EUR][1000 genomes]
rs73668013	1.00[EUR][1000 genomes]
rs73668122	1.00[EUR][1000 genomes]
rs7845145	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2761417	chr8:20523767-20669443	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1033319	chr8:20606592-20718378	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv831257	chr8:20610436-20767433	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1021366	chr8:20624387-20726669	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv539525	chr8:20624387-20726669	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20642200-20647400	Enhancers	Fetal Heart	heart
2	chr8:20644000-20645200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:20644200-20644800	Enhancers	Left Ventricle	heart
4	chr8:20644200-20651000	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links