Variant report

Variant	rs17093850
Chromosome Location	chr12:44294609-44294610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10748381	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10785488	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs11182303	1.00[YRI][hapmap]
rs12229940	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1320918	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs17093833	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17093848	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1819128	1.00[AMR][1000 genomes]
rs6582491	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7133980	1.00[AMR][1000 genomes]
rs7301628	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7302694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7971156	1.00[AMR][1000 genomes]
rs7976155	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899048	chr12:44209423-44307888	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44279200-44297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:44288000-44296000	Weak transcription	Psoas Muscle	Psoas
3	chr12:44292400-44294800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr12:44293800-44300800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr12:44294600-44296800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links