Variant report

Variant	rs17094413
Chromosome Location	chr14:85416783-85416784
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11159685	0.81[ASN][1000 genomes]
rs1351384	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1351385	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1480416	0.86[ASN][1000 genomes]
rs17120599	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1756583	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1958800	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4904216	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61981249	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61981250	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61981252	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs856635	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85414000-85421600	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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