Variant report

Variant	rs17094554
Chromosome Location	chr12:44766801-44766802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17094492	1.00[AMR][1000 genomes]
rs17094512	1.00[AMR][1000 genomes]
rs17094541	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv826356	chr12:44725069-44783443	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44699000-44782000	Weak transcription	Aorta	Aorta
2	chr12:44754000-44775600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:44760200-44770400	Weak transcription	Left Ventricle	heart
4	chr12:44760800-44769600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:44762000-44777400	Weak transcription	Fetal Intestine Small	intestine
6	chr12:44762000-44791200	Weak transcription	Fetal Intestine Large	intestine
7	chr12:44764000-44769000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:44764600-44770600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:44765400-44767600	Enhancers	Hela-S3	cervix
10	chr12:44765600-44767200	Enhancers	NHEK	skin
11	chr12:44765800-44767000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:44765800-44767200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:44765800-44767400	Enhancers	HMEC	breast
14	chr12:44766000-44767200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr12:44766400-44767200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:44766600-44771400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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