Variant report

Variant	rs17094799
Chromosome Location	chr12:44963829-44963830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11615791	1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs17094811	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17094813	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58044327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889339	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs60845296	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61262467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7304676	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087622	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:44946400-44976400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:44950000-44964000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:44954400-44970000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:44957400-44964000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:44959200-44964000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr12:44960000-44964200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:44960200-44964800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:44963800-44965600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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