Variant report

Variant	rs17094877
Chromosome Location	chr14:97494975-97494976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17094884	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17094887	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2024663	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56871417	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58955411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59184670	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs710271	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149193	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs742881	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044202	chr14:97155291-97683983	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv542179	chr14:97155291-97683983	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv948620	chr14:97334444-98133191	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv832867	chr14:97365919-97541763	Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1048462	chr14:97421360-97804598	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97489600-97495200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr14:97490000-97495200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:97490600-97495200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:97492600-97496000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:97494200-97495400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:97494200-97495600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
7	chr14:97494400-97495000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:97494400-97495200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:97494400-97499200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:97494600-97495400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:97494800-97495000	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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