Variant report

Variant	rs17096265
Chromosome Location	chr1:75565379-75565380
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10493562	1.00[YRI][hapmap]
rs17096153	0.83[AFR][1000 genomes]
rs17096252	0.83[AFR][1000 genomes]
rs17096261	0.83[AFR][1000 genomes]
rs17096275	0.83[AFR][1000 genomes]
rs17096288	1.00[YRI][hapmap];0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75559600-75566400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:75564800-75566600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:75565000-75565600	Weak transcription	A549	lung
4	chr1:75565000-75566600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:75565200-75566000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:75565200-75566200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:75565200-75566600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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