Variant report

Variant	rs17096301
Chromosome Location	chr10:91096117-91096118
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91092012..91093700-chr10:91094311..91097149,2	K562	blood:

Variant related genes	Relation type
ENSG00000119917	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10509571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10509572	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11203070	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11203072	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11203090	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11819073	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12248331	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12255504	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12766862	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1332330	0.81[AMR][1000 genomes]
rs1591051	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17120001	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17120004	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2274878	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34234196	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34712773	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35830608	0.81[AMR][1000 genomes]
rs3780878	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4339948	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4630205	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6586182	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6586183	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6586188	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7073534	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7085361	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7088579	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71479013	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7897619	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7897873	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7910389	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7916812	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs884407	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv1040375	chr10:91022218-91153074	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	esv34085	chr10:91065949-91174175	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17096301	IFIT5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91088000-91099800	Weak transcription	Gastric	stomach
2	chr10:91090200-91107600	Weak transcription	Pancreas	Pancrea
3	chr10:91093400-91097200	Enhancers	Brain Substantia Nigra	brain
4	chr10:91093400-91097800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr10:91093400-91100200	Weak transcription	K562	blood
6	chr10:91093400-91100800	Weak transcription	Right Ventricle	heart
7	chr10:91093600-91096600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:91093800-91097200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:91093800-91097400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:91093800-91099000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:91093800-91106000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:91093800-91106400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:91094000-91096200	Weak transcription	Hela-S3	cervix
14	chr10:91094000-91097200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:91094000-91097200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91094000-91097200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:91094000-91097200	Enhancers	Brain Anterior Caudate	brain
18	chr10:91094000-91097200	Weak transcription	NH-A	brain
19	chr10:91094000-91097400	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:91094000-91097400	Weak transcription	NHLF	lung
21	chr10:91094000-91098000	Weak transcription	HSMMtube	muscle
22	chr10:91094000-91098200	Weak transcription	HSMM	muscle
23	chr10:91094000-91098400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:91094000-91101000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:91094000-91102000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:91094000-91102200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr10:91094000-91103400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr10:91094000-91105400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:91094000-91110200	Weak transcription	Colonic Mucosa	Colon
30	chr10:91094000-91112000	Weak transcription	Esophagus	oesophagus
31	chr10:91094200-91096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:91094200-91096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:91094200-91096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:91094200-91096600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:91094200-91096600	Enhancers	Adipose Nuclei	Adipose
36	chr10:91094200-91096600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:91094200-91096800	Weak transcription	Fetal Stomach	stomach
38	chr10:91094200-91096800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr10:91094200-91096800	Weak transcription	HMEC	breast
40	chr10:91094200-91096800	Weak transcription	NHEK	skin
41	chr10:91094200-91097200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:91094200-91097200	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:91094200-91097200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:91094200-91097200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:91094200-91097200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:91094200-91097200	Weak transcription	Left Ventricle	heart
47	chr10:91094200-91097400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:91094200-91097400	Weak transcription	Aorta	Aorta
49	chr10:91094200-91097400	Enhancers	Brain Angular Gyrus	brain
50	chr10:91094200-91097400	Weak transcription	Fetal Lung	lung

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