Variant report

Variant	rs17097255
Chromosome Location	chr11:101734208-101734209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17097272	0.92[EUR][1000 genomes]
rs2083656	0.89[EUR][1000 genomes]
rs55908042	0.89[EUR][1000 genomes]
rs58969639	0.94[EUR][1000 genomes]
rs7117130	0.89[EUR][1000 genomes]
rs7117741	0.89[EUR][1000 genomes]
rs7121584	0.89[EUR][1000 genomes]
rs7128288	0.89[EUR][1000 genomes]
rs73581889	0.89[EUR][1000 genomes]
rs73587184	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052159	chr11:101439655-101853293	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1051457	chr11:101446705-101837650	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv530645	chr11:101451416-101778666	Bivalent/Poised TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832249	chr11:101571819-101749073	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv832250	chr11:101617934-101804020	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv430425	chr11:101626575-101741691	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101731400-101735200	Enhancers	HepG2	liver
2	chr11:101731800-101734800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:101731800-101736000	Enhancers	HUVEC	blood vessel
4	chr11:101731800-101738800	Enhancers	NHDF-Ad	bronchial
5	chr11:101732000-101735200	Enhancers	A549	lung
6	chr11:101732000-101735400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:101732600-101734400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:101732800-101734400	Enhancers	HSMM	muscle
9	chr11:101733000-101734600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:101733000-101734800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:101733400-101734400	Enhancers	NHEK	skin
12	chr11:101733400-101735000	Weak transcription	Liver	Liver
13	chr11:101733400-101735000	Enhancers	HMEC	breast
14	chr11:101733600-101734600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:101733600-101735400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:101734000-101734600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:101734000-101735000	Weak transcription	Hela-S3	cervix
18	chr11:101734000-101735600	Enhancers	NH-A	brain
19	chr11:101734000-101735800	Enhancers	Fetal Intestine Small	intestine
20	chr11:101734000-101737400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:101734000-101738600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:101734200-101734400	Enhancers	Fetal Intestine Large	intestine
23	chr11:101734200-101735000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:101734200-101735200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:101734200-101735200	Enhancers	Osteobl	bone
26	chr11:101734200-101736400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:101734200-101736800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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