Variant report

Variant	rs17097428
Chromosome Location	chr12:47342626-47342627
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11833980	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097394	1.00[AMR][1000 genomes]
rs55789035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47335800-47343400	Enhancers	NHDF-Ad	bronchial
2	chr12:47337000-47350400	Weak transcription	Psoas Muscle	Psoas
3	chr12:47338200-47343800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:47338400-47343800	Weak transcription	HMEC	breast
5	chr12:47338400-47343800	Weak transcription	NHEK	skin
6	chr12:47338800-47349800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:47341000-47343600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:47341000-47343800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:47342400-47342800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr12:47342400-47342800	Enhancers	Fetal Brain Female	brain
11	chr12:47342400-47347600	Enhancers	Hela-S3	cervix
12	chr12:47342600-47343200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr12:47342600-47343200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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