Variant report

Variant	rs17097630
Chromosome Location	chr14:21326283-21326284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:21325535..21326543-chr14:21438744..21440024,15	MCF-7	breast:
2	chr14:21165586..21166230-chr14:21325546..21326484,3	MCF-7	breast:
3	chr14:21325949..21326651-chr14:21439270..21440179,3	K562	blood:
4	chr14:21325086..21326530-chr14:21507784..21508853,5	MCF-7	breast:
5	chr14:21165736..21166589-chr14:21325539..21326522,2	K562	blood:
6	chr14:21325525..21326443-chr14:21341560..21342549,4	MCF-7	breast:
7	chr14:21164738..21167054-chr14:21324271..21326741,2	MCF-7	breast:
8	chr14:21306953..21309140-chr14:21323464..21326358,2	K562	blood:
9	chr14:21325871..21326463-chr14:21334726..21335414,2	K562	blood:
10	chr14:21326118..21326960-chr14:21336756..21337360,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000259130	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11848869	1.00[GIH][hapmap]
rs17097627	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758349	chr14:21216108-21471614	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759972	chr14:21216108-21471614	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	nsv427936	chr14:21216108-21531783	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
7	nsv428293	chr14:21216108-21531783	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21325800-21326400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr14:21325800-21326400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:21325800-21326400	Enhancers	Fetal Intestine Large	intestine
4	chr14:21325800-21326400	Enhancers	Placenta	Placenta
5	chr14:21325800-21326400	Enhancers	Fetal Thymus	thymus
6	chr14:21326000-21326400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr14:21326000-21326400	Active TSS	Brain Angular Gyrus	brain
8	chr14:21326000-21326400	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr14:21326000-21326400	Flanking Active TSS	Brain Hippocampus Middle	brain
10	chr14:21326000-21326400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
11	chr14:21326000-21326400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:21326000-21326400	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr14:21326000-21326400	Enhancers	Fetal Intestine Small	intestine
14	chr14:21326000-21326400	Enhancers	Ovary	ovary
15	chr14:21326000-21326400	Enhancers	Thymus	Thymus
16	chr14:21326000-21326400	Flanking Bivalent TSS/Enh	HepG2	liver
17	chr14:21326000-21326600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:21326000-21326600	Enhancers	HMEC	breast
19	chr14:21326200-21326400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:21326200-21326400	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr14:21326200-21326400	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
22	chr14:21326200-21326400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr14:21326200-21326800	Active TSS	A549	lung

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