Variant report

Variant	rs17098060
Chromosome Location	chr12:62956013-62956014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:62953650..62956031-chr12:62956662..62959616,2	MCF-7	breast:
2	chr12:62955537..62958369-chr12:62958968..62960475,2	K562	blood:
3	chr12:62879324..62880981-chr12:62954743..62956272,2	K562	blood:
4	chr12:62956004..62957777-chr12:62965289..62967550,2	K562	blood:
5	chr12:62954746..62957075-chr12:62963284..62964948,2	K562	blood:

Variant related genes	Relation type
ENSG00000061987	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10161203	0.84[JPT][hapmap]
rs1874881	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2133304	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2173086	0.84[JPT][hapmap]
rs3858677	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs61919481	0.96[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7953380	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7965248	0.84[JPT][hapmap]
rs7970112	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530690	chr12:62678463-62999462	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv821671	chr12:62794304-63007964	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv469418	chr12:62893199-62959137	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	nsv559156	chr12:62893199-62959137	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62907000-62987200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:62915800-62971600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:62917200-62995000	Weak transcription	Fetal Heart	heart
4	chr12:62917400-62960000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:62919800-62970000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr12:62924400-62969800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr12:62924800-62967600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:62927400-62967400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:62928000-62963400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:62928800-62995800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr12:62932000-62957200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:62935400-62956400	Strong transcription	Placenta	Placenta
13	chr12:62938000-62995400	Weak transcription	Stomach Mucosa	stomach
14	chr12:62944600-62989000	Weak transcription	Colonic Mucosa	Colon
15	chr12:62945000-62966000	Weak transcription	Esophagus	oesophagus
16	chr12:62948000-62956200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr12:62948200-62958600	Weak transcription	K562	blood
18	chr12:62950200-62960800	Weak transcription	Brain Germinal Matrix	brain
19	chr12:62950200-62966800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:62950400-62995600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr12:62950600-62958400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr12:62950600-62975000	Weak transcription	Right Ventricle	heart
23	chr12:62950600-62982600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr12:62950600-62991200	Weak transcription	Gastric	stomach
25	chr12:62950600-62996200	Weak transcription	Small Intestine	intestine
26	chr12:62950800-62968200	Weak transcription	Aorta	Aorta
27	chr12:62950800-62987600	Weak transcription	Pancreas	Pancrea
28	chr12:62950800-62995000	Weak transcription	NHEK	skin
29	chr12:62951000-62966000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:62951000-62987800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr12:62951000-62995600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr12:62951200-62958800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr12:62951200-62961000	Weak transcription	Ovary	ovary
34	chr12:62951200-62971600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:62951200-62979600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr12:62951200-62986800	Weak transcription	Brain Angular Gyrus	brain
37	chr12:62951200-62988600	Weak transcription	Spleen	Spleen
38	chr12:62951200-62995200	Weak transcription	Hela-S3	cervix
39	chr12:62951200-62995600	Weak transcription	HSMMtube	muscle
40	chr12:62951400-62956800	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr12:62951400-62959000	Weak transcription	A549	lung
42	chr12:62951400-62959000	Weak transcription	HMEC	breast
43	chr12:62951400-62959800	Weak transcription	Colon Smooth Muscle	Colon
44	chr12:62951400-62963000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:62951400-62966000	Weak transcription	Left Ventricle	heart
46	chr12:62951400-62966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr12:62951400-62995000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr12:62951600-62958600	Weak transcription	NHLF	lung
49	chr12:62952600-62956200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr12:62953200-62958600	Weak transcription	Primary T cells from cord blood	blood

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