Variant report

Variant	rs17098286
Chromosome Location	chr1:77867824-77867825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10493536	1.00[TSI][hapmap]
rs11162319	1.00[TSI][hapmap]
rs1167198	1.00[TSI][hapmap]
rs1167205	0.85[TSI][hapmap]
rs12076479	1.00[TSI][hapmap]
rs12079185	1.00[TSI][hapmap]
rs12079234	1.00[TSI][hapmap]
rs1670612	1.00[TSI][hapmap]
rs1670617	1.00[TSI][hapmap]
rs17100317	0.83[TSI][hapmap]
rs17100319	1.00[TSI][hapmap]
rs1721165	1.00[TSI][hapmap]
rs1779178	0.85[CEU][hapmap]
rs2054017	1.00[TSI][hapmap]
rs2602953	1.00[TSI][hapmap]
rs2815313	1.00[TSI][hapmap]
rs3851266	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3962875	1.00[TSI][hapmap]
rs4033035	1.00[TSI][hapmap]
rs59295145	0.81[EUR][1000 genomes]
rs59977708	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669724	1.00[TSI][hapmap]
rs72679564	0.96[EUR][1000 genomes]
rs72679591	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72679594	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534033	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1003714	chr1:77756861-77949309	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470719	chr1:77774413-78269207	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv546591	chr1:77774413-78269207	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77845200-77878000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:77845200-77878400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:77861600-77871800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:77863200-77871800	Weak transcription	Aorta	Aorta
5	chr1:77864200-77871200	Weak transcription	HSMMtube	muscle
6	chr1:77864400-77870600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:77865600-77877200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr1:77865800-77871800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:77866000-77871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr1:77866200-77871000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:77866200-77871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:77866600-77870600	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:77866800-77871200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:77867400-77870400	Weak transcription	Brain Angular Gyrus	brain
15	chr1:77867400-77870800	Weak transcription	Brain Substantia Nigra	brain
16	chr1:77867400-77871800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:77867800-77870200	Weak transcription	NHDF-Ad	bronchial
18	chr1:77867800-77870800	Weak transcription	Brain Anterior Caudate	brain
19	chr1:77867800-77870800	Weak transcription	Brain Cingulate Gyrus	brain

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