The 2.0 version of rSNPBase

Variant report

Variant rs17098320
Chromosome Location chr1:78564940-78564941
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:78535000-78566800 Weak transcription Rectal Mucosa Donor 31 rectum
2 chr1:78546600-78579800 Weak transcription Liver Liver
3 chr1:78553400-78567000 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr1:78554800-78579800 Weak transcription Duodenum Mucosa Duodenum
5 chr1:78555400-78608600 Weak transcription Pancreas Pancrea
6 chr1:78557800-78569200 Weak transcription Fetal Intestine Small intestine
7 chr1:78558600-78582800 Weak transcription Fetal Intestine Large intestine
8 chr1:78560800-78566800 Weak transcription Stomach Mucosa stomach
9 chr1:78562000-78566400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:78562000-78566600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:78562400-78566800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:78562600-78567000 Weak transcription Duodenum Smooth Muscle Duodenum
13 chr1:78562800-78566600 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:78562800-78566800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:78562800-78566800 Weak transcription Right Atrium heart
16 chr1:78563000-78566600 Weak transcription NHEK skin
17 chr1:78563200-78566200 Weak transcription Small Intestine intestine
18 chr1:78563200-78566800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr1:78563200-78567000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:78563400-78565800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
21 chr1:78563400-78565800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
22 chr1:78563400-78565800 Weak transcription NHDF-Ad bronchial
23 chr1:78563400-78566200 Weak transcription Fetal Heart heart
24 chr1:78563400-78566200 Weak transcription NH-A brain
25 chr1:78563400-78566400 Weak transcription Psoas Muscle Psoas
26 chr1:78563400-78566800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr1:78563400-78566800 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:78563400-78566800 Weak transcription HMEC breast
29 chr1:78563400-78568600 Weak transcription Left Ventricle heart
30 chr1:78563400-78569200 Weak transcription Aorta Aorta
31 chr1:78563600-78565800 Weak transcription Osteobl bone
32 chr1:78563600-78566600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr1:78563600-78566600 Weak transcription NHLF lung
34 chr1:78563600-78566800 Weak transcription Fetal Muscle Leg muscle
35 chr1:78563600-78569200 Weak transcription Right Ventricle heart
36 chr1:78563800-78566000 Weak transcription HSMMtube muscle
37 chr1:78564000-78565600 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:78564400-78565400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr1:78564400-78575800 Weak transcription HepG2 liver
40 chr1:78564800-78565000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:78564800-78565800 Weak transcription HSMM muscle
42 chr1:78564800-78570800 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015