Variant report

Variant	rs17098396
Chromosome Location	chr12:63238759-63238760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63237375..63239412-chr12:63328282..63330219,2	MCF-7	breast:
2	chr12:63230714..63233409-chr12:63236744..63239259,2	MCF-7	breast:
3	chr12:63227346..63229238-chr12:63238157..63241100,2	K562	blood:

Variant related genes	Relation type
ENSG00000111110	Chromatin interaction
ENSG00000252660	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11174723	1.00[MEX][hapmap]
rs12302398	1.00[MEX][hapmap]
rs12302449	1.00[MEX][hapmap]
rs12311870	1.00[MEX][hapmap]
rs17098414	0.81[AMR][1000 genomes]
rs41380144	1.00[MKK][hapmap]
rs55665363	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63226200-63240600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:63228800-63242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:63229200-63242200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:63229400-63240400	Weak transcription	Osteobl	bone
5	chr12:63234000-63241400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr12:63236400-63239400	Enhancers	Fetal Intestine Small	intestine
7	chr12:63236400-63239400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr12:63236400-63240400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:63236600-63239400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr12:63236800-63241200	Weak transcription	Gastric	stomach
11	chr12:63236800-63243800	Weak transcription	Small Intestine	intestine
12	chr12:63237000-63239000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr12:63237000-63239400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:63237200-63239200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr12:63237200-63239600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr12:63237200-63239800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr12:63237200-63241000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr12:63237200-63241200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr12:63237400-63241000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr12:63237600-63239600	Enhancers	Fetal Intestine Large	intestine
21	chr12:63237600-63241000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr12:63237800-63241400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr12:63237800-63242400	Weak transcription	GM12878-XiMat	blood
24	chr12:63237800-63243400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr12:63238000-63238800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr12:63238000-63239000	Enhancers	Fetal Kidney	kidney
27	chr12:63238000-63239200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr12:63238000-63239400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:63238000-63239400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr12:63238000-63240400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:63238000-63240600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr12:63238000-63240600	Enhancers	HepG2	liver
33	chr12:63238000-63242400	Weak transcription	Left Ventricle	heart
34	chr12:63238200-63239000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr12:63238200-63239600	Weak transcription	Brain Anterior Caudate	brain
36	chr12:63238200-63239600	Weak transcription	Brain Hippocampus Middle	brain
37	chr12:63238200-63240400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr12:63238200-63240400	Weak transcription	Brain Substantia Nigra	brain
39	chr12:63238200-63240400	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:63238200-63240400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr12:63238200-63240800	Weak transcription	Adipose Nuclei	Adipose
42	chr12:63238200-63241000	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr12:63238200-63241200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr12:63238400-63241200	Weak transcription	A549	lung
45	chr12:63238600-63239000	Weak transcription	Brain Angular Gyrus	brain
46	chr12:63238600-63239200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:63238600-63242400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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