Variant report

Variant	rs17098418
Chromosome Location	chr1:76695328-76695329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2631785	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2706202	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2783988	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs551877	1.00[CEU][hapmap]
rs565352	1.00[CEU][hapmap]
rs864205	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1008763	chr1:76692057-76723417	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1001452	chr1:76692057-76724652	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv546584	chr1:76693367-76721164	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76692200-76696000	Enhancers	Fetal Thymus	thymus
2	chr1:76692400-76695600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr1:76692400-76698200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:76692600-76698000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:76692600-76698200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:76692600-76698400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:76692800-76695600	Enhancers	Primary T cells from cord blood	blood
8	chr1:76692800-76695600	Enhancers	Thymus	Thymus
9	chr1:76692800-76698000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:76693400-76695400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr1:76693400-76697000	Enhancers	Fetal Lung	lung
12	chr1:76693600-76695800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:76693800-76698400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:76694000-76695600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:76694200-76695600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:76694200-76700600	Weak transcription	Fetal Stomach	stomach
17	chr1:76694400-76695600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr1:76694400-76695600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:76694400-76695600	Enhancers	HUVEC	blood vessel
20	chr1:76694400-76695800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:76694600-76695600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:76694600-76695600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:76694600-76695600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:76694600-76695600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:76694600-76695600	Enhancers	Adipose Nuclei	Adipose
26	chr1:76694600-76695600	Enhancers	Left Ventricle	heart
27	chr1:76694600-76695600	Enhancers	Lung	lung
28	chr1:76694600-76695600	Enhancers	Spleen	Spleen
29	chr1:76694600-76695800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr1:76694600-76705000	Weak transcription	Primary B cells from cord blood	blood
31	chr1:76694800-76695600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr1:76694800-76695600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr1:76694800-76695600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr1:76694800-76695600	Enhancers	Brain Angular Gyrus	brain
35	chr1:76694800-76695600	Enhancers	Brain Anterior Caudate	brain
36	chr1:76694800-76695600	Enhancers	Brain Hippocampus Middle	brain
37	chr1:76694800-76695600	Enhancers	Brain Substantia Nigra	brain
38	chr1:76694800-76696000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr1:76694800-76696000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr1:76695000-76695600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:76695000-76695600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr1:76695000-76695600	Enhancers	Brain Cingulate Gyrus	brain
43	chr1:76695000-76695600	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr1:76695000-76695600	Enhancers	Gastric	stomach
45	chr1:76695000-76695800	Enhancers	Brain Germinal Matrix	brain
46	chr1:76695000-76696000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr1:76695200-76695400	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr1:76695200-76695400	Enhancers	Psoas Muscle	Psoas
49	chr1:76695200-76695600	Enhancers	Right Atrium	heart
50	chr1:76695200-76696600	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links