Variant report

Variant	rs17098771
Chromosome Location	chr12:63416663-63416664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1666912	1.00[TSI][hapmap]
rs17098532	1.00[EUR][1000 genomes]
rs17098684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17098847	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7967970	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63415000-63418600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr12:63415200-63418600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:63415200-63419000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:63415400-63418600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:63415800-63419200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:63416000-63418600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr12:63416000-63418800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:63416200-63418800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:63416200-63418800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:63416600-63416800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr12:63416600-63418800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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