Variant report
Variant | rs17099867 |
---|---|
Chromosome Location | chr12:64233322-64233323 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:206)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
(count:9 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr12:64233283..64233835-chr12:64575189..64575759,3 | MCF-7 | breast: | |
2 | chr12:64231966..64234951-chr12:64236615..64238882,2 | MCF-7 | breast: | |
3 | chr12:64232886..64234110-chr12:64649608..64650623,12 | MCF-7 | breast: | |
4 | chr12:64232878..64233896-chr12:64649649..64650593,6 | MCF-7 | breast: | |
5 | chr12:64219747..64220434-chr12:64233020..64233910,3 | MCF-7 | breast: | |
6 | chr12:64232809..64233732-chr12:64630031..64630616,2 | MCF-7 | breast: | |
7 | chr12:64232868..64233765-chr12:64667261..64668056,2 | MCF-7 | breast: | |
8 | chr12:64232967..64233604-chr12:64648677..64649365,2 | MCF-7 | breast: | |
9 | chr12:64232788..64233929-chr12:64575209..64576068,7 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
SRGAP1 | TF binding region |
ENSG00000196935 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs11175206 | 0.81[CHB][hapmap] |
rs12229174 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs12230811 | 1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs17099869 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17099883 | 0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs57082798 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs58282814 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7299314 | 1.00[CEU][hapmap] |
rs73124618 | 0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs73126620 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7963684 | 0.82[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1046836 | chr12:63392391-64377169 | Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
2 | esv2759905 | chr12:63901801-64252172 | Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
3 | esv2758312 | chr12:63910416-64252172 | Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
4 | esv2751110 | chr12:63939733-64274680 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
5 | nsv832441 | chr12:64063776-64252172 | Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
6 | nsv746 | chr12:64189444-64234966 | Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
7 | nsv832442 | chr12:64228071-64442771 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:64216200-64237000 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
2 | chr12:64228200-64235800 | Enhancers | Fetal Brain Male | brain |
3 | chr12:64230600-64237000 | Weak transcription | Right Atrium | heart |
4 | chr12:64230800-64237000 | Weak transcription | Brain Germinal Matrix | brain |
5 | chr12:64231000-64237000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
6 | chr12:64232200-64236800 | Weak transcription | Fetal Brain Female | brain |