Variant report

Variant	rs17100173
Chromosome Location	chr14:63121835-63121836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10483749	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17256534	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17812058	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1953252	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899082	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4902152	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4902153	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043508	chr14:62750671-63150403	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv949518	chr14:62777098-63123208	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63117000-63123800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:63121400-63122200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr14:63121400-63122200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr14:63121400-63123400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:63121600-63122400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:63121600-63122400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr14:63121600-63122600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:63121600-63122800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:63121800-63122200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:63121800-63122400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:63121800-63123800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links