Variant report

Variant	rs17100214
Chromosome Location	chr12:64646391-64646392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:64615717..64617696-chr12:64646156..64650012,3	MCF-7	breast:
2	chr12:64644381..64647318-chr12:64648323..64650617,4	K562	blood:

Variant related genes	Relation type
ENSG00000174206	Chromatin interaction
ENSG00000243024	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs789713	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv3509287	chr12:64526217-64736995	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3509288	chr12:64526217-64736995	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64640200-64646400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:64645800-64646600	Enhancers	Brain Angular Gyrus	brain
3	chr12:64645800-64650600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr12:64646000-64646400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:64646000-64647000	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr12:64646200-64646400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr12:64646200-64646600	Enhancers	Brain Hippocampus Middle	brain
8	chr12:64646200-64647000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:64646200-64647000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:64646200-64647000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr12:64646200-64647000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr12:64646200-64647000	Enhancers	Liver	Liver
13	chr12:64646200-64647000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:64646200-64647000	Enhancers	Fetal Lung	lung
15	chr12:64646200-64647000	Flanking Active TSS	NHDF-Ad	bronchial
16	chr12:64646200-64647000	Enhancers	NHLF	lung
17	chr12:64646200-64647200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr12:64646200-64647200	Enhancers	Adipose Nuclei	Adipose
19	chr12:64646200-64647200	Enhancers	Osteobl	bone
20	chr12:64646200-64648200	Enhancers	Brain Anterior Caudate	brain
21	chr12:64646200-64648400	Enhancers	Brain Inferior Temporal Lobe	brain

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