Variant report

Variant	rs17100517
Chromosome Location	chr14:63383377-63383378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17100494	0.81[YRI][hapmap]
rs17100522	0.95[YRI][hapmap]
rs17100528	1.00[YRI][hapmap]
rs17100551	0.91[YRI][hapmap];0.89[AMR][1000 genomes]
rs17100561	0.93[ASW][hapmap];0.90[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58900215	0.89[AMR][1000 genomes]
rs73276452	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8018130	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8019319	0.93[ASW][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8019870	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042953	chr14:63314591-63384260	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63383000-63384600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr14:63383200-63384200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links