Variant report

Variant	rs17100696
Chromosome Location	chr12:65207803-65207804
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17100600	1.00[ASW][hapmap];0.82[LWK][hapmap]
rs17100604	1.00[ASW][hapmap];0.82[LWK][hapmap]
rs17100611	1.00[ASW][hapmap]
rs17100618	1.00[ASW][hapmap];0.94[LWK][hapmap]
rs17100671	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100699	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100704	0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100705	1.00[ASW][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100711	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17100715	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56916115	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9888397	1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:65194000-65216200	Weak transcription	Fetal Intestine Large	intestine
2	chr12:65205000-65212000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr12:65205000-65213600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:65205400-65208600	Weak transcription	Stomach Mucosa	stomach
5	chr12:65205400-65211800	Weak transcription	Hela-S3	cervix
6	chr12:65205600-65212000	Weak transcription	A549	lung
7	chr12:65207600-65208200	Strong transcription	Fetal Intestine Small	intestine
8	chr12:65207600-65208200	Enhancers	Gastric	stomach
9	chr12:65207600-65208600	Enhancers	GM12878-XiMat	blood
10	chr12:65207800-65208000	Enhancers	Lung	lung
11	chr12:65207800-65208200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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