Variant report

Variant	rs17100907
Chromosome Location	chr14:63715735-63715736
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1040613	1.00[AFR][1000 genomes]
rs1255564	1.00[AMR][1000 genomes]
rs1255570	1.00[AMR][1000 genomes]
rs1268647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:63691200-63716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:63699600-63716600	Weak transcription	Fetal Lung	lung
6	chr14:63700600-63732400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:63703400-63716000	Weak transcription	Psoas Muscle	Psoas
8	chr14:63708000-63720000	Weak transcription	Adipose Nuclei	Adipose
9	chr14:63708000-63733600	Weak transcription	Left Ventricle	heart
10	chr14:63711800-63716000	Genic enhancers	HUVEC	blood vessel
11	chr14:63712400-63716800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr14:63712400-63716800	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:63714200-63718200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:63714400-63716800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:63715000-63715800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr14:63715000-63716000	Enhancers	Fetal Stomach	stomach
17	chr14:63715000-63719200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:63715200-63716000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr14:63715200-63716200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
20	chr14:63715200-63716600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr14:63715200-63716600	Enhancers	NH-A	brain
22	chr14:63715200-63716800	Enhancers	Colon Smooth Muscle	Colon
23	chr14:63715400-63715800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:63715400-63715800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:63715400-63715800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:63715400-63715800	Enhancers	Small Intestine	intestine
27	chr14:63715400-63715800	Enhancers	NHLF	lung
28	chr14:63715400-63716000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:63715400-63716200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:63715400-63716200	Enhancers	Fetal Muscle Leg	muscle
31	chr14:63715400-63716200	Enhancers	Right Atrium	heart
32	chr14:63715400-63716200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:63715400-63716200	Enhancers	Osteobl	bone
34	chr14:63715400-63716800	Enhancers	Ovary	ovary
35	chr14:63715400-63717400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:63715600-63716000	Enhancers	Aorta	Aorta
37	chr14:63715600-63716800	Enhancers	Stomach Smooth Muscle	stomach
38	chr14:63715600-63717000	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links