Variant report

Variant	rs17101425
Chromosome Location	chr14:64367482-64367483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28361911	1.00[AMR][1000 genomes]
rs60261435	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64337800-64403800	Weak transcription	Thymus	Thymus
2	chr14:64342800-64368400	Weak transcription	Esophagus	oesophagus
3	chr14:64358200-64375800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:64358200-64377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:64358800-64377600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:64359000-64367800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:64360600-64382200	Weak transcription	Psoas Muscle	Psoas
8	chr14:64360800-64374200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:64360800-64377800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:64361200-64373600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:64361400-64369800	Weak transcription	Colonic Mucosa	Colon
12	chr14:64363400-64368400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:64363400-64374400	Weak transcription	Fetal Intestine Small	intestine
14	chr14:64363400-64375200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:64363400-64375400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr14:64363600-64367600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:64363600-64368200	Weak transcription	Liver	Liver
18	chr14:64363800-64375400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:64364400-64385200	Weak transcription	Pancreas	Pancrea
20	chr14:64364600-64375400	Weak transcription	Aorta	Aorta
21	chr14:64364600-64387800	Weak transcription	HMEC	breast
22	chr14:64364800-64375400	Weak transcription	Hela-S3	cervix
23	chr14:64365000-64367600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:64365000-64368400	Weak transcription	Ovary	ovary
25	chr14:64365000-64368800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:64365000-64369600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr14:64365000-64374200	Weak transcription	Brain Germinal Matrix	brain
28	chr14:64365000-64375000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:64365000-64375000	Weak transcription	Fetal Kidney	kidney
30	chr14:64365000-64430200	Weak transcription	Fetal Brain Male	brain
31	chr14:64365200-64367600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr14:64365200-64367600	Weak transcription	NHDF-Ad	bronchial
33	chr14:64365200-64375800	Weak transcription	Fetal Stomach	stomach
34	chr14:64365200-64386200	Weak transcription	Gastric	stomach
35	chr14:64365400-64368400	Weak transcription	Spleen	Spleen
36	chr14:64365400-64369200	Weak transcription	Lung	lung
37	chr14:64365400-64369400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:64365400-64376600	Weak transcription	Placenta	Placenta
39	chr14:64365400-64379800	Weak transcription	Fetal Thymus	thymus
40	chr14:64365400-64393600	Weak transcription	Right Ventricle	heart
41	chr14:64365600-64375400	Weak transcription	Stomach Mucosa	stomach
42	chr14:64365800-64370000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:64366000-64369800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr14:64366200-64368800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:64366400-64368600	Enhancers	Adipose Nuclei	Adipose
46	chr14:64366400-64368600	Enhancers	Dnd41	blood
47	chr14:64366400-64369000	Enhancers	Primary T helper cells PMA-I stimulated	--
48	chr14:64366400-64369400	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr14:64366600-64368400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr14:64366600-64368600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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