Variant report

Variant	rs17102209
Chromosome Location	chr1:46907954-46907955
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:46870674..46874174-chr1:46906955..46910035,3	K562	blood:
2	chr1:46907852..46908632-chr1:47013414..47014315,3	MCF-7	breast:
3	chr1:46907681..46909201-chr1:46942766..46943752,5	K562	blood:
4	chr1:46905639..46908191-chr1:46929446..46931823,2	K562	blood:
5	chr1:46907653..46908944-chr1:46993306..46995074,20	K562	blood:
6	chr1:46907829..46908706-chr1:46998510..46999437,3	K562	blood:
7	chr1:46871665..46872644-chr1:46907867..46908995,6	K562	blood:
8	chr1:46901747..46905392-chr1:46907375..46909614,3	K562	blood:
9	chr1:46907848..46908563-chr1:46988064..46988933,2	K562	blood:
10	chr1:46907713..46908466-chr1:46942834..46943730,2	MCF-7	breast:
11	chr1:46901693..46905847-chr1:46906304..46911340,7	K562	blood:
12	chr1:46907900..46908616-chr1:47010620..47011226,2	K562	blood:
13	chr1:46907167..46909679-chr1:46911926..46913949,3	K562	blood:
14	chr1:46872148..46872724-chr1:46907642..46908599,2	MCF-7	breast:
15	chr1:46878990..46879533-chr1:46907667..46908513,2	K562	blood:
16	chr1:46899022..46900983-chr1:46906400..46908672,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12402011	0.93[AMR][1000 genomes]
rs12406553	1.00[AMR][1000 genomes]
rs12407445	1.00[AMR][1000 genomes]
rs12407648	0.93[AMR][1000 genomes]
rs3737743	0.93[AMR][1000 genomes]
rs3818506	0.93[AMR][1000 genomes]
rs3818507	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60081306	1.00[ASN][1000 genomes]
rs74072346	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005189	chr1:46335186-46949309	Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv534946	chr1:46335186-46949309	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv2761743	chr1:46339858-47026743	Active TSS Weak transcription Bivalent Enhancer Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv1000562	chr1:46832451-47027044	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46872800-46908000	Weak transcription	Right Atrium	heart
2	chr1:46882000-46908200	Weak transcription	Brain Anterior Caudate	brain
3	chr1:46890800-46908200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:46899800-46908200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:46902200-46908000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:46902600-46908200	Weak transcription	Esophagus	oesophagus
7	chr1:46903800-46908000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr1:46904000-46908000	Weak transcription	Gastric	stomach
9	chr1:46904000-46908400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:46904600-46908200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:46905400-46908000	Weak transcription	Spleen	Spleen
12	chr1:46907000-46908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:46907600-46908000	Enhancers	K562	blood
14	chr1:46907800-46908200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr1:46907800-46908200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr1:46907800-46908200	Enhancers	Adipose Nuclei	Adipose
17	chr1:46907800-46909000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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