Variant report

Variant	rs17102232
Chromosome Location	chr14:24704522-24704523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24703308-24706319	A549	lung:	n/a	n/a
2	POLR2A	chr14:24704444-24704780	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr14:24703887-24705537	GM12892	blood:	n/a	n/a
4	POLR2A	chr14:24703342-24707196	HepG2	liver:	n/a	n/a
5	POLR2A	chr14:24700829-24709886	GM12891	blood:	n/a	n/a
6	POLR2A	chr14:24703991-24705319	PBDE	blood:	n/a	n/a
7	POLR2A	chr14:24699754-24707843	MCF10A-Er-Src	breast:	n/a	n/a
8	POLR2A	chr14:24704410-24704642	MCF-7	breast:	n/a	n/a
9	POLR2A	chr14:24703916-24704689	GM12892	blood:	n/a	n/a
10	POLR2A	chr14:24700092-24709898	MCF10A-Er-Src	breast:	n/a	n/a
11	POLR2A	chr14:24700264-24710645	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24703994..24706350-chr14:24732461..24734392,2	K562	blood:
2	chr14:24702582..24706480-chr14:24770203..24773016,3	K562	blood:
3	chr14:24701050..24705855-chr14:24766597..24769956,4	K562	blood:
4	chr14:24563223..24564956-chr14:24703531..24706151,2	K562	blood:
5	chr14:23340376..23342459-chr14:24704208..24707097,2	MCF-7	breast:
6	chr14:24701050..24707093-chr14:24765824..24771703,7	K562	blood:
7	chr14:24685104..24687849-chr14:24703499..24706342,3	K562	blood:

No data

Variant related genes	Relation type
NEDD8-MDP1	TF binding region
GMPR2	TF binding region
NEDD8	TF binding region
ENSG00000260669	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000092295	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000197324	Chromatin interaction

rs_ID	r²[population]
rs73604904	0.87[AFR][1000 genomes]
rs73604930	0.87[AFR][1000 genomes]
rs73604934	0.87[AFR][1000 genomes]
rs73604946	0.87[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24702600-24704600	Weak transcription	Ovary	ovary
2	chr14:24702600-24705000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:24702800-24705600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:24702800-24711200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:24703000-24704600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:24703000-24704600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:24703000-24704600	Weak transcription	Thymus	Thymus
8	chr14:24703000-24705000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:24703000-24705000	Weak transcription	Colonic Mucosa	Colon
10	chr14:24703000-24705000	Weak transcription	Esophagus	oesophagus
11	chr14:24703000-24705000	Weak transcription	Psoas Muscle	Psoas
12	chr14:24703000-24705000	Weak transcription	Right Ventricle	heart
13	chr14:24703000-24705200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr14:24703000-24706400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:24703000-24707000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:24703000-24709600	Strong transcription	Fetal Muscle Trunk	muscle
17	chr14:24703000-24711000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:24703200-24704600	Genic enhancers	Brain Angular Gyrus	brain
19	chr14:24703200-24704600	Weak transcription	Lung	lung
20	chr14:24703200-24704600	Enhancers	HUVEC	blood vessel
21	chr14:24703200-24704800	Genic enhancers	HSMM	muscle
22	chr14:24703200-24705000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:24703200-24705200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr14:24703200-24705400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr14:24703200-24705400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr14:24703200-24705600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:24703200-24705600	Weak transcription	Pancreas	Pancrea
28	chr14:24703200-24708200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:24703200-24708600	Weak transcription	Stomach Mucosa	stomach
30	chr14:24703200-24709600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
31	chr14:24703400-24704600	Strong transcription	Left Ventricle	heart
32	chr14:24703400-24704600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
33	chr14:24703400-24704600	Genic enhancers	Osteobl	bone
34	chr14:24703400-24710200	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:24703400-24710400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:24703400-24710400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:24703400-24710400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr14:24703400-24710600	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr14:24703600-24704600	Weak transcription	Fetal Brain Female	brain
40	chr14:24703600-24704600	Weak transcription	Fetal Stomach	stomach
41	chr14:24703600-24704600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:24703600-24704600	Genic enhancers	Dnd41	blood
43	chr14:24703600-24704800	Genic enhancers	Primary hematopoietic stem cells	blood
44	chr14:24703600-24705000	Weak transcription	Aorta	Aorta
45	chr14:24703600-24705200	Weak transcription	Fetal Kidney	kidney
46	chr14:24703600-24707400	Strong transcription	Placenta	Placenta
47	chr14:24703600-24708400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:24703600-24709000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:24703600-24709000	Strong transcription	Brain Substantia Nigra	brain
50	chr14:24703600-24709000	Weak transcription	Right Atrium	heart

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