Variant report

Variant	rs17102360
Chromosome Location	chr14:65410320-65410321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:65409058-65413386	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65407129..65411344-chr14:65424634..65427852,4	MCF-7	breast:
2	chr14:65395801..65398640-chr14:65409977..65412797,2	K562	blood:
3	chr14:65409807..65412168-chr14:65438533..65440170,2	MCF-7	breast:
4	chr14:65408375..65411114-chr14:65437552..65439159,4	MCF-7	breast:
5	chr14:65379820..65382321-chr14:65409596..65411872,2	MCF-7	breast:
6	chr14:65380406..65382948-chr14:65406634..65410888,4	MCF-7	breast:
7	chr14:65409026..65413439-chr14:65416032..65420633,4	MCF-7	breast:

No data

Variant related genes	Relation type
GPX2	TF binding region
ENSG00000258289	Chromatin interaction
ENSG00000125954	Chromatin interaction
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10873179	0.95[ASN][1000 genomes]
rs3742600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157667	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs942625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65382400-65417400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr14:65382400-65420000	Weak transcription	Fetal Brain Male	brain
3	chr14:65383000-65419400	Weak transcription	K562	blood
4	chr14:65393400-65422200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:65396000-65410400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:65396000-65413600	Weak transcription	Fetal Brain Female	brain
7	chr14:65396000-65417800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr14:65397400-65411200	Strong transcription	Dnd41	blood
9	chr14:65399000-65428000	Weak transcription	NHLF	lung
10	chr14:65399200-65412400	Weak transcription	Brain Germinal Matrix	brain
11	chr14:65400000-65410400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:65400000-65417000	Weak transcription	Colon Smooth Muscle	Colon
13	chr14:65400400-65415200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:65401400-65432200	Weak transcription	HUVEC	blood vessel
15	chr14:65401600-65412400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr14:65401600-65413200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:65401600-65435000	Weak transcription	NH-A	brain
18	chr14:65401800-65412600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:65402400-65415000	Weak transcription	Osteobl	bone
20	chr14:65403000-65412800	Strong transcription	Thymus	Thymus
21	chr14:65403400-65414600	Weak transcription	Left Ventricle	heart
22	chr14:65404000-65410600	Enhancers	Pancreas	Pancrea
23	chr14:65404000-65412200	Strong transcription	Fetal Thymus	thymus
24	chr14:65404400-65410400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:65404400-65414200	Weak transcription	Right Ventricle	heart
26	chr14:65404400-65415000	Weak transcription	Brain Hippocampus Middle	brain
27	chr14:65404400-65416600	Weak transcription	Psoas Muscle	Psoas
28	chr14:65404400-65419600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr14:65404600-65410400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr14:65404600-65410600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr14:65404600-65412200	Weak transcription	Brain Anterior Caudate	brain
32	chr14:65404600-65413400	Weak transcription	HSMMtube	muscle
33	chr14:65404600-65414600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr14:65404600-65415600	Weak transcription	Fetal Heart	heart
35	chr14:65404600-65418200	Weak transcription	Brain Angular Gyrus	brain
36	chr14:65404600-65419600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr14:65404800-65415000	Weak transcription	Ovary	ovary
38	chr14:65405000-65417200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr14:65405200-65410400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:65405400-65413200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr14:65405800-65416200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:65406000-65413000	Strong transcription	Adipose Nuclei	Adipose
43	chr14:65406200-65411000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:65406400-65415600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:65406600-65413800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:65406600-65438000	Weak transcription	Fetal Kidney	kidney
47	chr14:65406800-65410600	Weak transcription	HSMM	muscle
48	chr14:65407200-65410600	Weak transcription	GM12878-XiMat	blood
49	chr14:65407400-65412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:65407400-65414800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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