Variant report

Variant	rs17102487
Chromosome Location	chr1:47208576-47208577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11211305	1.00[CHB][hapmap]
rs12095096	1.00[CHB][hapmap]
rs12096548	1.00[CHB][hapmap]
rs17102441	1.00[CHB][hapmap];1.00[GIH][hapmap];0.80[ASN][1000 genomes]
rs17102456	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17102469	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17408791	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17448585	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17448613	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17448647	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3737735	1.00[CHB][hapmap]
rs3766216	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3766238	1.00[CHB][hapmap]
rs3766239	1.00[CHB][hapmap]
rs4660955	0.91[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6703563	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001455	chr1:46828004-47326539	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv534950	chr1:46828004-47326539	Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1013048	chr1:47132831-47377364	Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv534955	chr1:47132831-47377364	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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