Variant report

Variant	rs17102890
Chromosome Location	chr11:104566193-104566194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1030397	1.00[EUR][1000 genomes]
rs12276699	1.00[EUR][1000 genomes]
rs12291304	1.00[EUR][1000 genomes]
rs17093742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102721	1.00[EUR][1000 genomes]
rs17102725	1.00[EUR][1000 genomes]
rs17102781	1.00[EUR][1000 genomes]
rs17102811	1.00[EUR][1000 genomes]
rs17103039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103106	1.00[AMR][1000 genomes]
rs1863577	1.00[EUR][1000 genomes]
rs1893819	1.00[EUR][1000 genomes]
rs1893820	1.00[EUR][1000 genomes]
rs1893821	1.00[EUR][1000 genomes]
rs2555139	1.00[EUR][1000 genomes]
rs2850825	1.00[EUR][1000 genomes]
rs34464472	1.00[AMR][1000 genomes]
rs73612914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2761706	chr11:104523335-104634024	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1050346	chr11:104548749-104664665	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104563800-104566400	Enhancers	Hela-S3	cervix
2	chr11:104564600-104566200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:104564800-104566400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:104565000-104566200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:104565000-104566200	Enhancers	NH-A	brain
6	chr11:104565000-104566400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:104565000-104566400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr11:104565200-104566200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:104565200-104566200	Enhancers	Fetal Intestine Large	intestine
10	chr11:104565200-104566400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:104565200-104566600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr11:104565800-104566200	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:104565800-104571000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:104565800-104571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:104566000-104570800	Weak transcription	NHDF-Ad	bronchial
16	chr11:104566000-104571200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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