Variant report

Variant	rs17102926
Chromosome Location	chr14:24794732-24794733
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24767930..24771021-chr14:24792565..24795803,5	MCF-7	breast:
2	chr14:24794139..24796164-chr14:24797754..24799865,2	K562	blood:
3	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
4	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
5	chr14:24791657..24793644-chr14:24793834..24797111,3	MCF-7	breast:
6	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139899	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000100445	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000129467	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17102928	1.00[CEU][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2144490	1.00[CEU][hapmap]
rs57164636	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60014309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv564059	chr14:24776401-24796813	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv564060	chr14:24776401-24809795	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv516237	chr14:24793762-24799358	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24784600-24796400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:24784800-24796600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr14:24786200-24801600	Weak transcription	Left Ventricle	heart
4	chr14:24787000-24801200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:24787200-24796400	Weak transcription	Osteobl	bone
6	chr14:24788400-24801000	Weak transcription	Gastric	stomach
7	chr14:24790400-24796400	Weak transcription	Colonic Mucosa	Colon
8	chr14:24790800-24795200	Strong transcription	Adipose Nuclei	Adipose
9	chr14:24791600-24796600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:24792200-24798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:24792600-24794800	Enhancers	K562	blood
12	chr14:24793400-24796400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr14:24793400-24796600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:24793400-24797400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:24793600-24794800	Enhancers	Primary hematopoietic stem cells	blood
16	chr14:24793600-24796600	Weak transcription	Lung	lung
17	chr14:24793800-24796400	Weak transcription	Spleen	Spleen
18	chr14:24793800-24797200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:24793800-24801000	Weak transcription	Right Ventricle	heart
20	chr14:24794200-24795600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr14:24794200-24796400	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr14:24794200-24797200	Weak transcription	Fetal Stomach	stomach
23	chr14:24794400-24794800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr14:24794400-24795400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr14:24794400-24796400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr14:24794600-24794800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links